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2007-06-18Bioconductorチュートリアル @ NIG

R の導入について R の導入について - Bioconductorノート を含むブックマーク はてなブックマーク - R の導入について - Bioconductorノート R の導入について - Bioconductorノート のブックマークコメント

目次

  • R の導入について
    • Windowsの場合
    • Mac OS Xの場合
    • Unix系OSの場合
    • R による DDBJ のアクセス方法(なかまさん)
    • Bioconductor の導入

R は The Comprehensive R Archive Network からソースコードバイナリパッケージが配布されている。

screenshot


Windowsの場合

screenshot


Mac OS Xの場合

screenshot


UnixOSの場合

screenshot screenshot

R による DDBJ のアクセス方法(なかまさん)

BioConductor tutorialWindowsへのインストールについてくわしくかかれています。



Bioconductor の導入

Bioconductorパッケージ集であるので、R のもっているネットワーク機能をつかって導入することができます。

▼R を起動して、コンソール画面でつぎのスクリプト入力します。このスクリプトは、ネットワークからパッケージファイルダウンロードしつつ、パッケージの導入をおこなうので、実行にはPCネットワーク接続している必要があります。

source("http://bioconductor.org/biocLite.R")
biocLite()

このスクリプトによって次のパッケージインストールされる。

  1. affy
  2. affydata
  3. affyPLM
  4. annaffy
  5. annotate
  6. Biobase
  7. Biostrings
  8. DynDoc
  9. gcrma
  10. genefilter
  11. geneplotter
  12. hgu95av2
  13. limma
  14. marray
  15. matchprobes
  16. multtest
  17. reposTools
  18. ROC
  19. vsn
  20. xtable

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